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Snakemake log parser generates Wfbench-friendly task names/ids #166

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Merged
henricasanova merged 2 commits into from
Jul 21, 2026
Merged

Snakemake log parser generates Wfbench-friendly task names/ids #166

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9dbb5b7
Made the Snakemake translator generate WfChef-friendly task names/IDs
henricasanova Jul 21, 2026
9bb1478
typo--
henricasanova Jul 21, 2026
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4 changes: 3 additions & 1 deletion wfcommons/wfinstances/logs/snakemake.py
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Original file line number Diff line number Diff line change
Expand Up @@ -157,7 +157,9 @@ def _build_task_map(self):
shell_cmd = None
if rule_idx not in rules:
continue
self.task_map[task_idx] = rules[rule_idx] + "_" + str(task_idx)
# self.task_map[task_idx] = rules[rule_idx] + "_" + str(task_idx)
self.task_map[task_idx] = rules[rule_idx] + f"_ID{task_idx:07d}"

self.task_shell[task_idx] = shell_cmd
self.task_threads[task_idx] = threads
self.task_input_files[task_idx] = []
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