#

hapmap

Here are 7 public repositories matching this topic...

Poissonfish / iPat

iPat allows you to perform GWAS and GS with drags and clicks!

gui gwas genomics genome analysis vcf hapmap genome-analysis genomic-data-analysis gene-prediction association-studies ipat

Updated Jul 12, 2022
Java

krishnam / vcf2hmp

convert VCF to HMP format

tool convert vcf hapmap hmp

Updated Aug 18, 2020
Python

npredey / GeneticAncestryTool

plink pca principal-component-analysis hapmap bioinformatics-tool gwas-tools

Updated Apr 27, 2018
Python

AnstMikh / DNA

pipeline: from sra, bed, vcf to plink

python r pipeline plink samtools hapmap bcftools sratoolkit plink2 angsd

Updated Jul 26, 2021
Jupyter Notebook

tbrunetti / CoVE

Concordance Validation across Experiments

snps validation pipeline array tgp hapmap concordance 1000genomes

Updated Nov 21, 2017

jlboat / hapmap_to_qtl2

Convert HapMap file into a useable R qtl2 genotype file

python hapmap qtl-analyses qtl-mapping

Updated Aug 16, 2022
Python

ebenogoe / FounderForge

Point-and-click Shiny app and R package to prepare marker data (VCF, HapMap, numeric, PLINK) as an AlphaSimR founder population - QC, filtering, and export, no coding required.

simulation vcf r-package hapmap plant-breeding shiny-app alphasimr founder-population

Updated Jun 21, 2026
R

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