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Sunbeam Labs

Code related to the Sunbeam whole-genome shotgun sequencing pipeline

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  1. sunbeam sunbeam Public

    A robust, extensible metagenomics pipeline

    Python 177 45

  2. sbx_template sbx_template Public template

    Template for Sunbeam extensions.

    Python 3 3

Repositories

Showing 10 of 35 repositories
  • sbx_genomad Public

    Run geNomad end-to-end pipeline

    sunbeam-labs/sbx_genomad's past year of commit activity
    Python 0 0 0 2 Updated Sep 7, 2026
  • sbx_gene_clusters Public
    sunbeam-labs/sbx_gene_clusters's past year of commit activity
    Python 2 5 1 2 Updated Sep 7, 2026
  • sunbeam Public

    A robust, extensible metagenomics pipeline

    sunbeam-labs/sunbeam's past year of commit activity
    Python 177 45 24 11 Updated Sep 7, 2026
  • sbx_shotgun_unifrac Public

    Sunbeam extension for assigning metagenomic reads to a full bacterial phylogeny

    sunbeam-labs/sbx_shotgun_unifrac's past year of commit activity
    Python 0 0 2 2 Updated Sep 7, 2026
  • sbx_template Public template

    Template for Sunbeam extensions.

    sunbeam-labs/sbx_template's past year of commit activity
    Python 3 3 0 4 Updated Sep 7, 2026
  • sbx_sga Public

    A Sunbeam extension for Single Genome Assembly

    sunbeam-labs/sbx_sga's past year of commit activity
    Python 0 3 3 2 Updated Sep 7, 2026
  • sbx_baqlava Public

    Runs BAQLaVa on decontaminated reads.

    sunbeam-labs/sbx_baqlava's past year of commit activity
    Python 0 0 0 5 Updated Sep 7, 2026
  • sbx_coassembly Public

    Sunbeam extension to co-assemble metagenomic reads using Megahit

    sunbeam-labs/sbx_coassembly's past year of commit activity
    Python 0 2 1 1 Updated Sep 7, 2026
  • sbx_kraken Public

    Extension for running kraken2 and kraken2-biom

    sunbeam-labs/sbx_kraken's past year of commit activity
    Python 0 3 1 4 Updated Sep 7, 2026
  • sbx_mapping Public

    Extension to map reads against a set of reference genomes

    sunbeam-labs/sbx_mapping's past year of commit activity
    Python 0 1 0 1 Updated Sep 7, 2026
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