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AttributeError: 'csr_matrix' object has no attribute 'A' when running clf.fit(adata.X).predict()

Status: Open.

#28 In mousepixels/sanbomics_scripts;

· victorsanchezarevalo opened on Jan 25, 2025

Issues with scvelo

Status: Open.

#27 In mousepixels/sanbomics_scripts;

· panapapa14 opened on Oct 10, 2024

ribosomal genes

Status: Open.

#26 In mousepixels/sanbomics_scripts;

· The1stMartian opened on Sep 18, 2024

Salmon index issue

Status: Open.

#25 In mousepixels/sanbomics_scripts;

· AndreaGhiroldi opened on Feb 19, 2024

Error in import_atac function

Status: Open.

#24 In mousepixels/sanbomics_scripts;

· EmanAbda opened on Jan 20, 2024

single_cell_analysis_complete_class.ipynb

Status: Open.

#23 In mousepixels/sanbomics_scripts;

· PilanEli opened on Dec 20, 2023

Error :ValueError: Found array with 0 feature(s) (shape=(249101, 0)) while a minimum of 1 is required.

Status: Open.

#22 In mousepixels/sanbomics_scripts;

· ruchikabhat opened on Nov 30, 2023

Issue convert anndata to seurat object

Status: Open.

#21 In mousepixels/sanbomics_scripts;

· djlisko01 opened on Sep 27, 2023

ERROR in pseudobulk_pyDeseq2.ipynb with pseudo replicates

Status: Open.

#19 In mousepixels/sanbomics_scripts;

· redvoidling opened on Aug 24, 2023

SoupX tutorial: meta.data nCount_RNA contains information from previous RNA assay

Status: Open.

#18 In mousepixels/sanbomics_scripts;

· KriBaLin opened on Aug 8, 2023

No fragment file present when extracting gene activity

Status: Open.

#17 In mousepixels/sanbomics_scripts;

· akkku0918 opened on Jul 26, 2023

local variable 'id_length' referenced before assignment

Status: Open.

#15 In mousepixels/sanbomics_scripts;

· xyin0918 opened on May 2, 2023