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support 5D data
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#689:
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mixed-spim-extensions
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add compatability for 5D data
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Update spimquant/config/snakebids.yml
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plaques
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Merge pull request #196 from khanlab/mixed-spim-extensions
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rewrite code to avoid formatter bug
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fmt
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Potential fix for pull request finding
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Support datasets mixing .ims and .ome.zarr image formats
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Give the vessel graph merge fewer, fatter dask workers
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Stop pybids indexing the insides of image containers
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Stop SLURM launching the plaque job once per GPU
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Drop segmentation methods that are left covering no stains
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Treat segmentation as (method, stain) pairs, not a cross product
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Add LANTERN 5-fold deep-learning plaque segmentation
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setup target rule properly, fixes to transform script
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Add extract_bbox_in_template_space.py script for template-space bbox …
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Add bbox template crop feature (partial - missing extraction script)
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Merge pull request #190 from khanlab/revert-n4-mask
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v0.9.1
v0.9.1
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updates to localrule and resources
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