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  1. iqtree3 iqtree3 Public

    IQ-TREE version 3: software for phylogenetics

    C++ 162 43

Repositories

Showing 10 of 11 repositories
  • iqtree.github.io Public

    IQ-TREE main website

    iqtree/iqtree.github.io's past year of commit activity
    CSS 2 12 0 4 Updated Sep 10, 2026
  • iqtree3 Public

    IQ-TREE version 3: software for phylogenetics

    iqtree/iqtree3's past year of commit activity
    C++ 162 GPL-2.0 43 58 5 Updated Sep 10, 2026
  • piqtree Public

    A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference

    iqtree/piqtree's past year of commit activity
    Python 51 GPL-2.0 9 1 1 Updated Sep 7, 2026
  • iqtree2 Public

    IQ-TREE software version 2: phylogenetics by maximum likelihood

    iqtree/iqtree2's past year of commit activity
    C++ 336 GPL-2.0 72 113 5 Updated Jul 22, 2026
  • calibratree Public

    Fossil calibation annotation for Bayesian molecular dating 🧬

    iqtree/calibratree's past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 1 0 Updated Jul 13, 2026
  • cmaple Public

    MAximum Parsimonious Likelihood Estimation in C/C++

    iqtree/cmaple's past year of commit activity
    C 12 GPL-2.0 4 6 1 Updated May 1, 2026
  • VBayes Public

    Variational time tree inference with Graph Neural Networks

    iqtree/VBayes's past year of commit activity
    Python 1 GPL-2.0 0 0 0 Updated Nov 24, 2025
  • paml Public
    iqtree/paml's past year of commit activity
    C 5 GPL-3.0 1 2 0 Updated May 23, 2025
  • decenttree Public

    Fast Neighbor-Joining and other distance-based methods for phylogenetics

    iqtree/decenttree's past year of commit activity
    C++ 16 GPL-2.0 9 5 4 Updated Jun 21, 2024
  • cmaple_api Public

    A Demo of CMaple API documentation

    iqtree/cmaple_api's past year of commit activity
    0 0 0 0 Updated May 14, 2024
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