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epigen-UCSD

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  1. atac_seq_pipeline atac_seq_pipeline Public

    Python 6

  2. huang-natgen2021 huang-natgen2021 Public

    Jupyter Notebook 4

  3. HiC_scripts HiC_scripts Public

    HiC processing scripts used in the center.

    Jupyter Notebook 3 4

  4. merfish_tools merfish_tools Public

    Functions and scripts for processing RNA MERFISH data

    Jupyter Notebook 3 1

  5. MERlin MERlin Public

    Forked from emanuega/MERlin

    MERlin is an extensible analysis pipeline applied to decoding MERFISH data

    Python 2 2

  6. utility_epigen utility_epigen Public

    Shell 1 1

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Showing 10 of 24 repositories
  • merfish_tools Public

    Functions and scripts for processing RNA MERFISH data

    epigen-UCSD/merfish_tools's past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated May 18, 2026
  • MERlin Public Forked from emanuega/MERlin

    MERlin is an extensible analysis pipeline applied to decoding MERFISH data

    epigen-UCSD/MERlin's past year of commit activity
    Python 2 MIT 36 1 0 Updated Mar 29, 2026
  • MERMAKE Public Forked from deprekate/MERMAKE
    epigen-UCSD/MERMAKE's past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Mar 9, 2026
  • MERFISH_Plus_Paper Public
    epigen-UCSD/MERFISH_Plus_Paper's past year of commit activity
    Python 0 0 0 0 Updated Jan 16, 2026
  • bpToolbox Public

    scripts and functions for single cell genomic analysis

    epigen-UCSD/bpToolbox's past year of commit activity
    R 1 0 0 0 Updated Jan 8, 2026
  • new_merfish_pipeline Public
    epigen-UCSD/new_merfish_pipeline's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 22, 2025
  • Spateo-with-MERFISH-Data Public
    epigen-UCSD/Spateo-with-MERFISH-Data's past year of commit activity
    0 0 1 0 Updated Nov 21, 2023
  • bican Public
    epigen-UCSD/bican's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 3, 2023
  • MERlin_Parameters Public

    Parameter files for MERlin

    epigen-UCSD/MERlin_Parameters's past year of commit activity
    0 0 0 0 Updated Feb 21, 2023
  • epigen_ucsd_django Public
    epigen-UCSD/epigen_ucsd_django's past year of commit activity
    Python 1 1 140 0 Updated Jun 28, 2021
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