fix: preserve deprecated API key scopes

[TorstenDittmann]

Summary

• Preserve exact API key scope IDs when initializing the scopes selector
• Keep deprecated scopes like documents.read and documents.write checked after saving
• Count category state from exact selected scope IDs instead of normalized aliases

Tests

• bun run check

[greptile-apps]

Greptile Summary

Updates the API key scope selector to preserve deprecated scope IDs exactly.
Initializes checked scopes from saved scope IDs without alias normalization.
Computes category selection state from the exact selected scope IDs.

Confidence Score: 5/5

Safe to merge based on the scoped API key selector change.

The change is limited to preserving exact selected scope identifiers and computing category state from those exact values, matching the intended behavior for deprecated scopes.

T-Rex Logs

What T-Rex did

• Attempted a Playwright render of the documents.read surface, but the execution blocker occurred when the real component mounted in the browser, throwing PAGEERROR Layout is not defined before rendering documents.read.

_{Ran code and verified through T-Rex}

_{Reviews (1): Last reviewed commit: "fix: preserve deprecated API key scopes" | Re-trigger Greptile}