[codex] Improve TraceDecay follow-up diagnostics

[ScriptedAlchemy]

Summary

• add doctor reporting for registry/store manifest identity drift
• persist richer MCP analytics for transport/tool kind, failures, and context memory matches without fact bodies
• record TypeScript ignored-dependency candidates and surface MCP search hints for symbols behind ignored dependencies
• dedupe repeated pending session fact proposals and add project/session hint coverage
• warn when Cursor transcript rows contain literal ${workspaceFolder} placeholders that would break session recall
• make daemon status distinguish missing, stale, inaccessible, unreachable, and connectable sockets
• keep selected-project graph-reader search hints read-only when dispatching through registered project selectors

Verification

• cargo test --lib doctor::tests::registry_drift_findings_report_manifest_identity_mismatches -- --nocapture
• cargo test --test typescript_extraction_test test_ts_import_type_records_ignored_dependency_candidates -- --nocapture
• cargo test --test mcp_handler_test test_search_hints_at_ignored_dependency_candidates -- --nocapture
• cargo test --test automation_session_reflector_runner_test session_fact_proposals_dedupe_repeated_pending_facts_across_runs -- --nocapture
• cargo test --features test-transport --test mcp_server_test context_call_writes_memory_match_analytics_without_fact_bodies -- --nocapture
• cargo test --features test-transport --test mcp_server_test failed_tool_call_writes_mcp_runtime_analytics_event -- --nocapture
• cargo test --lib tool_hints -- --nocapture
• cargo test --test hooks_test test_build_codex_session_context -- --nocapture
• cargo test --test agent_test test_cursor_healthcheck_warns_on_literal_workspace_folder_transcript_path -- --nocapture
• cargo test --lib daemon::tests::service_status -- --nocapture
• cargo test --lib mcp::tools::handlers::tests::graph_reader_selector -- --nocapture
• cargo test --lib mcp::tools::handlers::tests::selected_project_retrieve_finds_selected_project_response_handle -- --nocapture
• cargo fmt --check
• cargo check --workspace
• tracedecay sync

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Latest commit: b44c87d

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[chatgpt-codex-connector]

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