fix(mimic-iv): update Charlson ICD-10-CM codes for C4A, C7A, and C7B#2043
Open
acnimma wants to merge 1 commit into
Open
fix(mimic-iv): update Charlson ICD-10-CM codes for C4A, C7A, and C7B#2043acnimma wants to merge 1 commit into
acnimma wants to merge 1 commit into
Conversation
ICD-10-CM added categories after Quan et al. (2005) that were absent from the Charlson malignancy and metastatic mappings in MIT-LCP#2017. Exclude C4A (Merkel cell carcinoma) as a skin malignancy per Quan's skin exception; include C7A as primary malignant neuroendocrine tumor in malignant_cancer; include C7B as secondary neuroendocrine tumor in metastatic_solid_tumor. Regenerate postgres and duckdb dialect copies from the BigQuery source. Fixes MIT-LCP#2017
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
malignant_cancer, C7B inmetastatic_solid_tumorTest plan
pytest tests/test_transpile.py(161 tests)charlson.sqlFixes #2017