Rib segmentation + low-RAM nnU-Net inference - #135

Merged

Hendrik-code merged 18 commits into

mainfrom

Aug 25, 2026

Commits on Aug 19, 2026

git add remove internal code
robert-graf
committed
d8f7a3b
add Rib prediction and processing
robert-graf
committed
aa48da3

Commits on Aug 21, 2026

fix overflow issue if uint8 is exactly 255
robert-graf
committed
e386ce1
better splitting
robert-graf
committed
a53d469
Merge branch 'rib' of github.com:Hendrik-code/TPTBox into rib
robert-graf
committed
3ae54eb
enable running with low RAM pc by splitting the nnunet prediction. (for the 0.8 full ct model we need 250 GB of RAM for a full body image.)
robert-graf
committed
179ee32
add option to not shortcut
robert-graf
committed
9ab0a99
Merge branch 'rib' of github.com:Hendrik-code/TPTBox into rib
robert-graf
committed
3f931b1
move folder and update documentaiton
robert-graf
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7346238
remove temporary code
robert-graf
committed
51aaf15
re add missed ccs
robert-graf
committed
edc0b44

Commits on Aug 24, 2026

Merge branch 'main' into rib
robert-graf
authored
3c53ad3
Merge branch 'rib' of github.com:Hendrik-code/TPTBox into rib
robert-graf
committed
a4d6cea
reimplement fetching zoom from nnUNet config.
robert-graf
committed
72cc324
fix dataset process
robert-graf
committed
5c05f80
Merge branch 'rib' of github.com:Hendrik-code/TPTBox into rib
robert-graf
committed
8306771
tune GPU memory patching
robert-graf
committed
3b9f709
ruff
robert-graf
committed
db262ba