Skip to content

Latest commit

 

History

3 Commits

Folders and files

NameName
Last commit message
Last commit date
 
 
 
 
 
 
 
 
 
 

Repository files navigation

GenSpectrum Loculus Configuration

The recommended setup for Loculus is based on Kubernetes and tutorials are available on the Loculus homepage (e.g. this one for a local setup and this one using k3d and nginx).

If Kubernetes is not an option, you may explore the option of using a Docker Compose-based setup. This repository provides a small Docker Compose reference for running Loculus with RSV A and H5N1. It includes ingestion, preprocessing, SILO, LAPIS, Keycloak and PostgreSQL.

Start

docker compose up -d

The default local endpoints are:

Service URL
Website http://localhost:3000
Backend http://localhost:8079
LAPIS gateway http://localhost:8080
Keycloak http://localhost:8083

Keycloak admin credentials are admin:admin. Ingest starts automatically and repeats every two hours.

Configuration

Runtime configuration lives under config/. Copy the optional environment example to change the Loculus image version, ports, or the NCBI API key:

cp .env.example .env

Stop

docker compose down
docker compose down -v

The second command also removes all local data.

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

2 watching

Forks

Releases

Packages

Contributors

Languages