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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 41 10

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 26 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 699 repositories
  • AllenNeuralDynamics/breathing-codabench-challenge's past year of commit activity
    Python 0 1 2 0 Updated Sep 19, 2026
  • AllenNeuralDynamics/neuron-proofreading-evaluation's past year of commit activity
    Python 0 MIT 0 0 2 Updated Sep 19, 2026
  • dynamic-routing-tutorials Public

    Tutorials for analyzing brain-wide Neuropixels recordings during a flexible sensory-switching task in mice (Dynamic Routing project)

    AllenNeuralDynamics/dynamic-routing-tutorials's past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Sep 19, 2026
  • aind-file-standards Public

    This repository contains the file standards for the Allen Institute for Neural Dynamics

    AllenNeuralDynamics/aind-file-standards's past year of commit activity
    0 MIT 0 12 6 Updated Sep 19, 2026
  • aind-metadata-service Public

    REST API to compile metadata from various databases

    AllenNeuralDynamics/aind-metadata-service's past year of commit activity
    Python 3 MIT 1 9 2 Updated Sep 18, 2026
  • AllenNeuralDynamics/LC-beh-physiology-analysis's past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Sep 18, 2026
  • aind-vr-foraging-pipeline Public

    Pipeline for VR Foraging Task

    AllenNeuralDynamics/aind-vr-foraging-pipeline's past year of commit activity
    Nextflow 0 0 1 0 Updated Sep 18, 2026
  • aind-vr-foraging-primary-data-nwb-packaging Public

    Capsule that packages primary data for VR Foraging task using data contract

    AllenNeuralDynamics/aind-vr-foraging-primary-data-nwb-packaging's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 18, 2026
  • aind-capsule-eye-tracking Public

    Port of the lims2 eye-tracking pipeline - outputs annotated points and ellipse fits for eye-perimeter, pupil and corneal reflection.

    AllenNeuralDynamics/aind-capsule-eye-tracking's past year of commit activity
    Python 1 0 0 0 Updated Sep 18, 2026
  • aind-bigstitcher-qc Public

    Utilities for QC of BigStitcher alignment results

    AllenNeuralDynamics/aind-bigstitcher-qc's past year of commit activity
    Java 0 0 0 0 Updated Sep 18, 2026