Do you have code others might find useful?

[dblana]

If you have code that you think might be useful to others, please leave a comment below and let us know.

If there's something stopping you from sharing your code, tell us that too.

I know that I'm always worried that if I share my code, others might think it is not very elegant 😒 or it is difficult to understand 😰 or they might even find actual mistakes 😱

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[aaa34169]

I have forked the folder and i have been starting to clean my code for sharing.
Its mainly Python and R code you could use for gait processing. As you see there is no Matlab code, i switched a long time ago, because i wasn t confortable with my "dark" matlab i installed on my laptop.
any way

i can share :

• (Excel-R) scripts for repeatability testing based on Standard error of meauserement
• script for generating from c3ds, excel spreadsheet formatting for statistical software (SPSS, R,...)
• modelling code ( bodybuilder or pyCGM2-based)
• scripts for convenient emg processing and reporting

that i have in mind so far

[dblana]

That's great, thank you so much Fabien! Can't wait to see your code 😃

[ignazioa]

Hi @dblana. Congrats for the very nice initiative.
I recently wrote a simple MLP classifier for Diplegic Gait patterns using Python, Tensor-flow and Keras.
Full disclosure , my driver is to test/improve our (Moveshelf) Python API integration (https://github.com/moveshelf/python-api-example) but I am happy to share the source code and since it's based on open-access data (https://github.com/pyCGM2/pyCGM2-benchmarks/releases/tag/PIG), it's very easy to reproduce.
You can find a Jupyter notebook version here.
Let me know if you think (happy to hear from others as well :-) ) it can be useful and what it could be a nice way to share the code (I will also push the notebook in a Github repo).

[aaa34169]

Ignazio, dimitra That a nice contribution ignazio. i see and read more and more article about machine learning and gait analysis. That would be great if the CMAS open-code project could have a machine learning folder. Your proposal, ignazio, remind me that i have to make pyCGM2 compatble with python3. thanks ;-). moreover, your proposal also confirm importance of having acess to open-data. dimitra, as you probably know, i am back at nantes france but i keep my acosiation with salford. I wont be at the open code meeting in september :-(. Keep me in touch with all discussions. regards fabien Le mar. 20 août 2019 à 10:18, Ignazio Aleo <notifications@github.com> a écrit :

…

Hi @dblana <https://github.com/dblana>. Congrats for the very nice initiative. I wrote a simple MLP classifier for Diplegic Gait patterns using Python, Tensor-flow and Keras. Full disclosure , my driver is to test/improve our (Moveshelf) Python API integration (https://github.com/moveshelf/python-api-example) but I am happy to share the source code and since it's based on open-access data ( https://github.com/pyCGM2/pyCGM2-benchmarks/releases/tag/PIG), it's very easy to reproduce. You can find a Jupyter notebook version on: https://colab.research.google.com/drive/1dFoQtAba8BaA51zk0mIXg0z3Pdx4JDvk#forceEdit=true&offline=true&sandboxMode=true&scrollTo=CBfX68v99Dmy . Let me know if you think (happy to hear from others as well :-) ) it can be useful and what it could be a nice way to share the code (I will also push the notebook in a Github repo). — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#12?email_source=notifications&email_token=AAXUMBNYEAED2MGAIVKOPY3QFOZHZA5CNFSM4HEKH2TKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOD4VUOLQ#issuecomment-522929966>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAXUMBLL7I67RTAYD7Z6KVDQFOZHZANCNFSM4HEKH2TA> .

-- ---------------------------------------------------------------------------------------------- Fabien Leboeuf Research fellow ( University of salford) ------------------------------------------------------------------------------------------------ - phD Mechanics-Biomechanics (university of Poitiers, FRANCE) ------------------------------------------------------------------------------------------------ College of Health & Social Care University of Salford Allerton Building Frederick Road Campus Salford, M6 6PU, UNITED KINGDOM ------------------------------------------------------------------------------------------------

[ignazioa]

Hi @dblana, Fabien,

just a quick update on the topic. As anticipated, the (already public) Jupyter code has been pushed to our python example repo (https://github.com/moveshelf/python-api-example). You can now easily find it on: https://github.com/moveshelf/python-api-example/blob/master/notebooks/Gait_patterns_TF_Keras.ipynb

@aaa34169 Looking forward to see PyCGM update ;-)

@dblana I hope this helps. Looking forward to hear more feedback!